recipe kcalign

Kalgin-based codon-aware aligner for multiple sequences

Homepage:

https://github.com/davebx/kc-align

Documentation:

https://github.com/davebx/kc-align/blob/master/README.md

License:

OTHER / AFL-3.0-only

Recipe:

/kcalign/meta.yaml

package kcalign

(downloads) docker_kcalign

versions:
1.0.2-01.0.1-11.0.1-01.0-00.6.5-00.6.4-00.6.3-00.6.1-00.6-0

1.0.2-01.0.1-11.0.1-01.0-00.6.5-00.6.4-00.6.3-00.6.1-00.6-00.5.16-00.5.15-00.5.14-00.5.13-10.5.13-00.5.11-00.5.9-00.5.8-00.5.7-00.5.6-00.5.4-00.5.3-00.5.2-00.5-0

depends biopython:

depends kalign3:

depends mafft:

depends python:

>=3.6

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kcalign

and update with::

   mamba update kcalign

To create a new environment, run:

mamba create --name myenvname kcalign

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kcalign:<tag>

(see `kcalign/tags`_ for valid values for ``<tag>``)

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