recipe khmer

khmer k-mer counting library

Homepage

https://khmer.readthedocs.io/

Developer docs

https://github.com/dib-lab/khmer

License

BSD / BSD License

Recipe

/khmer/meta.yaml

Links

biotools: khmer, doi: 10.12688/f1000research.6924.1

package khmer

(downloads) docker_khmer

Versions

3.0.0a3-0, 3.0.0a2-1, 3.0.0a2-0, 3.0.0a1-0, 2.1.2-0, 2.1-0, 2.1rc1-0, 2.0-2, 2.0-1, 2.0-0

Depends bz2file

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends python

>=3.7,<3.8.0a0

Depends screed

>=1.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install khmer

and update with:

conda update khmer

or use the docker container:

docker pull quay.io/biocontainers/khmer:<tag>

(see khmer/tags for valid values for <tag>)