khmer

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khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Home https://khmer.readthedocs.org/
Versions 2.0
License BSD-3-Clause
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/khmer/2.0

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install khmer

and update with:

conda update khmer

docker

A Docker container is available at https://quay.io/repository/biocontainers/khmer.