recipe kinsimriboswitch

Pipeline for the simulation of RNA–ligand interaction kinetics as outlined in Kuehnl et al. 2017, https://doi.org/10.1186/s12859-017-1823-5

Homepage

http://www.bioinf.uni-leipzig.de/~felix/

License

GPLv3

Recipe

/kinsimriboswitch/meta.yaml

package kinsimriboswitch

(downloads) docker_kinsimriboswitch

Versions

0.3-1, 0.3-0

Depends coreutils

Depends gmp

>=6.1.2,<7.0a0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-clone

Depends perl-devel-assert

Depends perl-file-slurp

Depends perl-heap

Depends perl-inline

Depends perl-inline-c

Depends perl-ipc-system-simple

Depends perl-list-moreutils

Depends perl-math-random-mt-auto

Depends perl-math-round

Depends perl-parallel-loops

Depends perl-parse-recdescent

Depends perl-sys-info

Depends r

Depends r-argparser

Depends r-rcolorbrewer

Depends treekin

Depends viennarna

>=2.4.11,<2.5.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kinsimriboswitch

and update with:

conda update kinsimriboswitch

or use the docker container:

docker pull quay.io/biocontainers/kinsimriboswitch:<tag>

(see kinsimriboswitch/tags for valid values for <tag>)