recipe kinsimriboswitch

Pipeline for the simulation of RNA--ligand interaction kinetics as outlined in Kuehnl et al. 2017, https://doi.org/10.1186/s12859-017-1823-5

Homepage:

http://www.bioinf.uni-leipzig.de/~felix/

License:

GPLv3

Recipe:

/kinsimriboswitch/meta.yaml

package kinsimriboswitch

Versions:

0.3-3,  0.3-2,  0.3-1,  0.3-0

Depends:

• coreutils

• gmp >=6.2.1,<7.0a0

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

• perl >=5.26.2,<5.26.3.0a0

• perl-clone

• perl-devel-assert

• perl-file-slurp

• perl-heap

• perl-inline

• perl-inline-c

• perl-ipc-system-simple

• perl-list-moreutils

• perl-math-random-mt-auto

• perl-math-round

• perl-parallel-loops

• perl-parse-recdescent

• perl-sys-info

• r

• r-argparser

• r-rcolorbrewer

• treekin

• viennarna >=2.4.17,<2.5.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install kinsimriboswitch

and update with:

conda update kinsimriboswitch

or use the docker container:

docker pull quay.io/biocontainers/kinsimriboswitch:<tag>

(see kinsimriboswitch/tags for valid values for <tag>)

Download stats

Link to this page

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