recipe kleborate

Screening Klebsiella genome assemblies for MLST, sub-species, and other Klebsiella related genes of interest

Homepage:

https://github.com/katholt/Kleborate

License:

GPL3 / GNU General Public License v3 or later (GPLv3+)

Recipe:

/kleborate/meta.yaml

package kleborate

Versions:

2.3.2-0,  2.3.1-0,  2.3.0-0,  2.2.0-0,  2.1.0-1,  2.1.0-0,  2.0.4-1,  2.0.4-0,  2.0.3-0, 

2.3.2-0,  2.3.1-0,  2.3.0-0,  2.2.0-0,  2.1.0-1,  2.1.0-0,  2.0.4-1,  2.0.4-0,  2.0.3-0,  2.0.1-1,  2.0.1-0,  2.0.0-1,  2.0.0-0,  1.0.0-1,  1.0.0-0,  0.3.0-0

Depends:

• biopython >=1.73,<1.78

• blast >=2.2.31

• kaptive

• mash

• python >=3.7

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install kleborate

and update with:

conda update kleborate

or use the docker container:

docker pull quay.io/biocontainers/kleborate:<tag>

(see kleborate/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kleborate/README.html)