recipe kmc

Tools for efficient k-mer counting and filtering of reads based on k-mer content.

Homepage

https://github.com/refresh-bio/kmc

License

GPL / GPL-3

Recipe

/kmc/meta.yaml

KMC is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of DNA sequences. KMC tools allow performing various operations on k-mers sets.

package kmc

(downloads) docker_kmc

Versions
3.2.1-13.2.1-03.1.2rc1-03.1.1-13.1.1-03.1.1rc1-23.1.1rc1-13.1.1rc1-03.1.0-0

3.2.1-13.2.1-03.1.2rc1-03.1.1-13.1.1-03.1.1rc1-23.1.1rc1-13.1.1rc1-03.1.0-03.0.1-23.0.1-13.0.1-03.0.0-33.0.0-23.0.0-13.0.0-02.3.0-32.3.0-22.3.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kmc

and update with:

conda update kmc

or use the docker container:

docker pull quay.io/biocontainers/kmc:<tag>

(see kmc/tags for valid values for <tag>)

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