- recipe kmer-jellyfish
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence
- Homepage:
- Developer docs:
- License:
GPL / GPL-3.0
- Recipe:
- Links:
biotools: jellyfish, doi: 10.1093/bioinformatics/btr011
- package kmer-jellyfish¶
-
- Versions:
2.3.0-3
,2.3.0-2
,2.3.0-1
,2.3.0-0
,1.1.12-2
,1.1.12-1
,1.1.12-0
- Depends:
libgcc-ng
>=10.3.0
libstdcxx-ng
>=10.3.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install kmer-jellyfish
and update with:
conda update kmer-jellyfish
or use the docker container:
docker pull quay.io/biocontainers/kmer-jellyfish:<tag>
(see kmer-jellyfish/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/kmer-jellyfish/README.html)