recipe kmerinshort

KmerInShort counts kmers from a fasta/fastq file or list of files, and outputs results in a text file. It is limited to short kmers (k<15). It is a part of the FEELnc pipeline (V.Wucher et al.)

Homepage

https://github.com/rizkg/KmerInShort

License

aGPL v3

Recipe

/kmerinshort/meta.yaml

package kmerinshort

(downloads) docker_kmerinshort

Versions

1.0.1-1,  1.0.1-0

Depends

  • zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kmerinshort

and update with:

conda update kmerinshort

or use the docker container:

docker pull quay.io/biocontainers/kmerinshort:<tag>

(see kmerinshort/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kmerinshort/README.html)