recipe kneaddata

KneadData is a tool designed to perform quality control on metagenomic sequencing data.

Homepage

http://huttenhower.sph.harvard.edu/kneaddata

License

MIT / MIT

Recipe

/kneaddata/meta.yaml

KneadData is a tool designed to perform quality control on metagenomic sequencing data, especially data from microbiome experiments. In these experiments, samples are typically taken from a host in hopes of learning something about the microbial community on the host. However, metagenomic sequencing data from such experiments will often contain a high ratio of host to bacterial reads. This tool aims to perform principled in silico separation of bacterial reads from these "contaminant" reads, be they from the host, from bacterial 16S sequences, or other user-defined sources.

package kneaddata

(downloads) docker_kneaddata

Versions
0.10.0-00.9.0-00.7.4-10.7.4-00.7.3-00.7.2-10.7.2-00.7.0-00.6.1-2

0.10.0-00.9.0-00.7.4-10.7.4-00.7.3-00.7.2-10.7.2-00.7.0-00.6.1-20.6.1-00.5.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kneaddata

and update with:

conda update kneaddata

or use the docker container:

docker pull quay.io/biocontainers/kneaddata:<tag>

(see kneaddata/tags for valid values for <tag>)

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