- recipe knot-asm-analysis
KNOT: Knowledge Network Overlap exTraction is a tool for the investigation of fragmented long read assemblies.
- package knot-asm-analysis¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install knot-asm-analysis and update with:: mamba update knot-asm-analysis
To create a new environment, run:
mamba create --name myenvname knot-asm-analysis
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/knot-asm-analysis:<tag> (see `knot-asm-analysis/tags`_ for valid values for ``<tag>``)