recipe kodoja

Kodoja: identifying viruses from plant RNA sequencing data

Homepage:

https://github.com/abaizan/kodoja/

License:

MIT

Recipe:

/kodoja/meta.yaml

package kodoja

Versions:

0.0.10-0,  0.0.9-0,  0.0.8-0,  0.0.7-0,  0.0.6-0,  0.0.5-0,  0.0.4-0,  0.0.3-1,  0.0.3-0, 

0.0.10-0,  0.0.9-0,  0.0.8-0,  0.0.7-0,  0.0.6-0,  0.0.5-0,  0.0.4-0,  0.0.3-1,  0.0.3-0,  0.0.2-0

Depends:

• biopython

• fastqc

• kaiju

• kraken

• ncbi-genome-download

• numpy

• pandas

• python

• trimmomatic

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install kodoja

and update with:

conda update kodoja

or use the docker container:

docker pull quay.io/biocontainers/kodoja:<tag>

(see kodoja/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kodoja/README.html)