- recipe kofamscan
KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam
- Homepage:
- License:
MIT License
- Recipe:
- Links:
KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam (a customized HMM database of KEGG Orthologs (KOs)). K number assignments with scores above the predefined thresholds for individual KOs are more reliable than other proposed assignments. Such high score assignments are highlighted with asterisks '*' in the output. The K number assignments facilitate the interpretation of the annotation results by linking the user's sequence data to the KEGG pathways and EC numbers.
- package kofamscan¶
-
- Versions:
1.3.0-2
,1.3.0-1
,1.3.0-0
,1.2.0-0
,1.1.0-0
,1.0.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install kofamscan
and update with:
conda update kofamscan
or use the docker container:
docker pull quay.io/biocontainers/kofamscan:<tag>
(see kofamscan/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/kofamscan/README.html)