recipe krakentools

KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.

Homepage:

https://github.com/jenniferlu717/KrakenTools

License:

GPL / GPL-3.0

Recipe:

/krakentools/meta.yaml

Links:

biotools: krakentools

package krakentools

(downloads) docker_krakentools

versions:

1.2-0,  1.1-0,  1.0.1-0,  0.1-0

depends biopython:

depends numpy:

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install krakentools

and update with::

   mamba update krakentools

To create a new environment, run:

mamba create --name myenvname krakentools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/krakentools:<tag>

(see `krakentools/tags`_ for valid values for ``<tag>``)

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Link to this page

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