recipe krakenuniq

Metagenomics classifier with unique k-mer counting for more specific results

Homepage

https://github.com/fbreitwieser/krakenuniq

License

GPLv3

Recipe

/krakenuniq/meta.yaml

Links

biotools: krakenhll

package krakenuniq

Versions

0.5.8-3,  0.5.8-2,  0.5.8-1,  0.5.8-0,  0.5.7-0,  0.5.6-0,  0.5.5-0,  0.5.3-0,  0.5.2-0

Depends

• kmer-jellyfish 1.*

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• perl >=5.26.2,<5.26.3.0a0

• perl-libwww-perl

• perl-lwp-protocol-https

• rsync

• tar

• wget

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install krakenuniq

and update with:

conda update krakenuniq

or use the docker container:

docker pull quay.io/biocontainers/krakenuniq:<tag>

(see krakenuniq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/krakenuniq/README.html)