recipe krocus

krocus performs multi-locus sequence typing from uncorrected long reads.

Homepage

https://github.com/andrewjpage/krocus

License

GPL / GPL-3.0

Recipe

/krocus/meta.yaml

Krocus can predict a sequence type directly from uncorrected long reads, and was designed to consume read data as it is produced, providing results in minutes.

package krocus

Versions

1.0.1-1,  1.0.1-0,  1.0.0-0,  0.2.3-0,  0.2.2-1,  0.2.2-0

Depends

• biopython >=1.68

• pyfastaq >=3.14.0

• python >=3

• setuptools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install krocus

and update with:

conda update krocus

or use the docker container:

docker pull quay.io/biocontainers/krocus:<tag>

(see krocus/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/krocus/README.html)