recipe krocus

krocus performs multi-locus sequence typing from uncorrected long reads.

Homepage:

https://github.com/andrewjpage/krocus

License:

GPL / GPL-3.0

Recipe:

/krocus/meta.yaml

Krocus can predict a sequence type directly from uncorrected long reads, and was designed to consume read data as it is produced, providing results in minutes.

package krocus

Versions:

1.0.3-0,  1.0.2-0,  1.0.1-1,  1.0.1-0,  1.0.0-0,  0.2.3-0,  0.2.2-1,  0.2.2-0

Depends:

• biopython >=1.68

• pyfastaq >=3.14.0

• python >=3

• setuptools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install krocus

and update with:

conda update krocus

or use the docker container:

docker pull quay.io/biocontainers/krocus:<tag>

(see krocus/tags for valid values for <tag>)

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Link to this page

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