krocus performs multi-locus sequence typing from uncorrected long reads.
Krocus can predict a sequence type directly from uncorrected long reads, and was designed to consume read data as it is produced, providing results in minutes.
- Required By
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install krocus
and update with:
conda update krocus
or use the docker container:
docker pull quay.io/biocontainers/krocus:<tag>
(see krocus/tags for valid values for