recipe kssd

K-mer substring space decomposition

Homepage

https://github.com/yhg926/public_kssd

License

Apache Software License

Recipe

/kssd/meta.yaml

Links

doi: 10.1101/729665

Kssd is a command-line tool for large-scale sequences sketching and resemblance- and containment-analysis. It sketches sequences by k-mer substring space sampling/shuffling. It handles DNA sequences of both fasta or fastq format, whether gzipped or not.

package kssd

(downloads) docker_kssd

Versions

1.1-01.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kssd

and update with:

conda update kssd

or use the docker container:

docker pull quay.io/biocontainers/kssd:<tag>

(see kssd/tags for valid values for <tag>)