recipe libis

Low input Bisulfite sequencing alignment

Homepage:

https://github.com/Dangertrip/LiBis

License:

MIT / MIT

Recipe:

/libis/meta.yaml

package libis

Versions:

0.1.6-0,  0.1.5.8-0,  0.1.5.7-0,  0.1.5.6-0,  0.1.5.5-0,  0.1.5.4-0,  0.1.5.3-0,  0.1.5.2-0,  0.1.5.1-0, 

0.1.6-0,  0.1.5.8-0,  0.1.5.7-0,  0.1.5.6-0,  0.1.5.5-0,  0.1.5.4-0,  0.1.5.3-0,  0.1.5.2-0,  0.1.5.1-0,  0.1.5-0,  0.1.4-0,  0.1.3-0,  0.1.2-0,  0.1.1-0,  0.1.0-0,  0.0.15-2,  0.0.15-0,  0.0.14-0,  0.0.12-0,  0.0.11-0,  0.0.9-2,  0.0.9-1,  0.0.9-0

Depends:

• bedtools

• cutadapt

• fastqc

• matplotlib-base

• moabs >=1.3.8.5

• numpy

• pandas

• pysam >=0.15.3

• python >=3

• scikit-learn

• scipy

• seaborn

• trim-galore

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install libis

and update with:

conda update libis

or use the docker container:

docker pull quay.io/biocontainers/libis:<tag>

(see libis/tags for valid values for <tag>)

Download stats

Link to this page

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