recipe liquorice

A tool for bias correction and quantification of changes in coverage around regions of interest in cfDNA WGS datasets

Homepage:

https://github.com/epigen/LIQUORICE

License:

GPL / GPL-3.0

Recipe:

/liquorice/meta.yaml

See https://liquorice.readthedocs.io for more information.

package liquorice

Versions:

0.5.5-1,  0.5.5-0,  0.5.4-0,  0.5.3-0

Depends:

• biopython 1.79

• deeptools 3.5.1

• joblib 1.0.1

• lmfit 1.0.2

• matplotlib-base 3.1.1

• modin 0.8.2

• numpy 1.21.2

• pandas 1.1.4

• parallel

• pybedtools 0.8.2

• pybigwig 0.3.18

• pysam 0.16.0.1

• python >=3.7.9

• scikit-learn 0.24.2

• scipy 1.7.1

• seaborn 0.11.2

• swifter 1.0.9

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install liquorice

and update with:

conda update liquorice

or use the docker container:

docker pull quay.io/biocontainers/liquorice:<tag>

(see liquorice/tags for valid values for <tag>)

Download stats

Link to this page

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