recipe lofreq

A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data

Homepage:

http://csb5.github.io/lofreq/

License:

MIT

Recipe:

/lofreq/meta.yaml

Links:

usegalaxy-eu: lofreq_call

package lofreq

Versions:

2.1.5-6,  2.1.5-5,  2.1.5-4,  2.1.5-3,  2.1.5-2,  2.1.5-1,  2.1.5-0,  2.1.4-3,  2.1.4-2, 

2.1.5-6,  2.1.5-5,  2.1.5-4,  2.1.5-3,  2.1.5-2,  2.1.5-1,  2.1.5-0,  2.1.4-3,  2.1.4-2,  2.1.3.1-0,  2.1.2-0

Depends:

• htslib >=1.14,<1.15.0a0

• libgcc-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• samtools

Required By:

• minvar

• variabel

• somaticseq

• harvest-variants

• pathogen-profiler

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install lofreq

and update with:

conda update lofreq

or use the docker container:

docker pull quay.io/biocontainers/lofreq:<tag>

(see lofreq/tags for valid values for <tag>)

Download stats

Link to this page

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