recipe lohhla

A computational tool to evaluate HLA loss using next-generation sequencing data.

Homepage:

https://bitbucket.org/mcgranahanlab/lohhla

License:

UNKNOWN

Recipe:

/lohhla/meta.yaml

package lohhla

Versions:

20171108-3,  20171108-2,  20171108-1,  20171108-0

Depends:

• bedtools

• bioconductor-biostrings

• bioconductor-rsamtools

• novoalign

• picard

• r-base

• r-beeswarm

• r-optparse <1.6.4

• r-seqinr

• r-zoo

• samtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install lohhla

and update with:

conda update lohhla

or use the docker container:

docker pull quay.io/biocontainers/lohhla:<tag>

(see lohhla/tags for valid values for <tag>)

Notes

The tool is available as command `lohhla`.

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Link to this page

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