recipe lohhla

A computational tool to evaluate HLA loss using next-generation sequencing data.

Homepage

https://bitbucket.org/mcgranahanlab/lohhla

License

UNKNOWN

Recipe

/lohhla/meta.yaml

package lohhla

(downloads) docker_lohhla

Versions

20171108-1, 20171108-0

Depends bedtools

Depends bioconductor-biostrings

Depends bioconductor-rsamtools

Depends novoalign

Depends picard

Depends r-base

Depends r-beeswarm

Depends r-optparse

Depends r-seqinr

Depends r-zoo

Depends samtools

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install lohhla

and update with:

conda update lohhla

or use the docker container:

docker pull quay.io/biocontainers/lohhla:<tag>

(see lohhla/tags for valid values for <tag>)

Notes

The tool is available as command `lohhla`.