recipe lotus2

LotuS2 is a lightweight complete 16S/18S/ITS pipeline

Homepage:

http://lotus2.earlham.ac.uk/

Developer docs:

https://github.com/hildebra/lotus2/

License:

GPL-3.0-or-later

Recipe:

/lotus2/meta.yaml

package lotus2

Versions:

2.24-0,  2.23-0,  2.22-0,  2.21-0,  2.19-0,  2.17-0,  2.16-0,  2.14-0,  2.12-1, 

2.24-0,  2.23-0,  2.22-0,  2.21-0,  2.19-0,  2.17-0,  2.16-0,  2.14-0,  2.12-1,  2.12-0,  2.11-0,  2.09.2-0,  2.09.1-0,  2.09-0,  2.08-0,  2.07-0,  2.06-0,  2.05.1-0,  2.04-1,  2.04-0,  2.02-0,  2.01-1,  2.01-0

Depends:

• bioconductor-dada2

• bioconductor-phyloseq

• blast

• cd-hit

• clustalo

• fasttree

• infernal

• iqtree

• itsx

• lambda <2

• lca >=0.23

• mafft

• minimap2

• perl

• perl-getopt-long

• r-base

• r-dplyr

• rdp_classifier

• rtk

• sdm 2.06

• swarm

• unzip

• vsearch

• wget

• zip

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install lotus2

and update with:

conda update lotus2

or use the docker container:

docker pull quay.io/biocontainers/lotus2:<tag>

(see lotus2/tags for valid values for <tag>)

Download stats

Link to this page

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