recipe lrtk

This is a unified and versatile toolkit for analyzing Linked-Read sequencing data.

Homepage:

https://github.com/ericcombiolab/LRTK

License:

MIT

Recipe:

/lrtk/meta.yaml

package lrtk

Versions:

1.5-0,  1.3-0,  1.2-0,  1.1-0,  1.0-0

Depends:

• aquila

• bcftools

• bwa

• fastp

• freebayes

• gatk

• hapcut2

• parallel

• picard

• python

• samtools

• vcflib

• whatshap

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install lrtk

and update with:

conda update lrtk

or use the docker container:

docker pull quay.io/biocontainers/lrtk:<tag>

(see lrtk/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/lrtk/README.html)