recipe ltr_finder

LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.

Homepage:

https://github.com/NBISweden/LTR_Finder/

License:

MIT

Recipe:

/ltr_finder/meta.yaml

package ltr_finder

versions:

1.07-3,  1.07-2,  1.07-1,  1.07-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends perl:

depends perl-gd:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ltr_finder

and update with::

   mamba update ltr_finder

To create a new environment, run:

mamba create --name myenvname ltr_finder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ltr_finder:<tag>

(see `ltr_finder/tags`_ for valid values for ``<tag>``)

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