recipe magpurify

Identify and remove incorrectly binned contigs from metagenome-assembled genomes.

Homepage:

https://github.com/snayfach/MAGpurify

License:

GPL / GPL-3

Recipe:

/magpurify/meta.yaml

package magpurify

versions:

2.1.2-1,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.1-0,  1.0-2,  1.0-1

depends biopython:

depends blast:

depends coverm:

depends hmmer:

depends last:

depends mash:

depends numpy:

depends pandas:

depends prodigal:

depends python:

>=3.6

depends scikit-learn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install magpurify

and update with::

   mamba update magpurify

To create a new environment, run:

mamba create --name myenvname magpurify

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/magpurify:<tag>

(see `magpurify/tags`_ for valid values for ``<tag>``)

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Link to this page

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