recipe mango

A scalable genomic visualization tool

Homepage:

https://github.com/bdgenomics/mango

Documentation:

https://bdg-mango.readthedocs.io/en/latest/

Developer docs:

https://github.com/bigdatagenomics/mango

License:

Apache 2

Recipe:

/mango/meta.yaml

package mango

versions:

0.0.5-4,  0.0.5-3,  0.0.5-2,  0.0.5-1,  0.0.5-0

depends cigar:

0.1.3

depends dask:

depends distributed:

depends ipykernel:

>=5.1.2

depends ipython:

7.8.0

depends ipywidgets:

7.0.0

depends matplotlib:

2.0.2

depends modin:

depends openjdk:

>=8,<9

depends psutil:

depends pyspark:

2.4.4

depends python:

>3

depends traitlets:

>=4.3.0,<5.0

depends traittypes:

>=0.0.6

depends widgetsnbextension:

>=3.5.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mango

and update with::

   mamba update mango

To create a new environment, run:

mamba create --name myenvname mango

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mango:<tag>

(see `mango/tags`_ for valid values for ``<tag>``)

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