recipe markermag

linking MAGs with 16S rRNA marker genes

Homepage:

https://pypi.org/project/MarkerMAG/

License:

AGPL-3.0

Recipe:

/markermag/meta.yaml

package markermag

Versions:

1.1.28-0,  1.1.27-0,  1.1.26-0

Depends:

• barrnap

• biopython

• blast

• bowtie2

• hmmer

• matplotlib-base

• numpy

• pandas

• plotly

• python

• samtools

• seaborn

• seqtk

• setuptools

• spades

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install markermag

and update with:

conda update markermag

or use the docker container:

docker pull quay.io/biocontainers/markermag:<tag>

(see markermag/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/markermag/README.html)