recipe marvd2

Metagenomic Archaeal Virus Detector 2

Homepage:

https://bitbucket.org/MAVERICLab/marvd2

Documentation:

https://bitbucket.org/MAVERICLab/marvd2/src/master/README.md

License:

GPL / GPL-3.0-only

Recipe:

/marvd2/meta.yaml

package marvd2

Versions:

0.11.3-0,  0.11.2-0

Depends:

• biopython >=1.78,<=1.80

• ete3 >=3.1.2,<=3.1.3

• hmmer >=3.2.1,<=3.3.2

• joblib >=1.0.1

• matplotlib-base >=3.3.4

• mmseqs2 >=12.113e3

• numpy >=1.18.1,<2.0a0

• pandas >=1.2.3,<=1.4.3

• prodigal 2.6.3.*

• psutil >=5.7.2,<=5.9.2

• python >=3.9,<3.10.0a0

• scikit-learn >=0.23.2

• scipy >=1.5.3,<1.9.1

• swifter >=1.0.6

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install marvd2

and update with:

conda update marvd2

or use the docker container:

docker pull quay.io/biocontainers/marvd2:<tag>

(see marvd2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/marvd2/README.html)