recipe mashmap

A fast approximate aligner for long DNA sequences

Homepage

https://github.com/marbl/MashMap

License

Custom

Recipe

/mashmap/meta.yaml

package mashmap

(downloads) docker_mashmap

Versions

2.0-2, 2.0-1, 2.0-0, 1.0-1, 1.0-0

Depends
  • gsl >=2.2.1,<2.3.0a0

  • libstdcxx-ng >=4.9

  • openblas >=0.2.20,<0.2.21.0a0

  • zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mashmap

and update with:

conda update mashmap

or use the docker container:

docker pull quay.io/biocontainers/mashmap:<tag>

(see mashmap/tags for valid values for <tag>)