recipe mashtree

Create a tree using Mash distances

Homepage

https://github.com/lskatz/mashtree

License

GPL-3.0

Recipe

/mashtree/meta.yaml

package mashtree

(downloads) docker_mashtree

Versions

0.55-0, 0.37-0, 0.36-0, 0.35.4-0, 0.30-2, 0.30-0, 0.28-0, 0.26-0, 0.25-0, 0.21-0, 0.20-0, 0.12-0

Depends libgcc-ng

>=7.3.0

Depends mash

>=1.1

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-bioperl

>=1.7.2

Depends perl-dbd-sqlite

>=1.58

Depends quicktree

Depends sqlite

>=3.28.0,<4.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mashtree

and update with:

conda update mashtree

or use the docker container:

docker pull quay.io/biocontainers/mashtree:<tag>

(see mashtree/tags for valid values for <tag>)