recipe massiveqc

Tools for QC massive RNA-seq samples

Homepage:

https://github.com/shimw6828/MassiveQC

License:

MIT / MIT

Recipe:

/massiveqc/meta.yaml

package massiveqc

Versions:

0.1.1-0,  0.1.0-0,  0.0.7-0,  0.0.5-0

Depends:

• atropos

• bamtools

• fastparquet

• fastq-screen

• hisat2

• more-itertools

• numpy

• pandas >=1.3.2

• python

• samtools

• scikit-learn

• shap

• subread

• tqdm

• xopen

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install massiveqc

and update with:

conda update massiveqc

or use the docker container:

docker pull quay.io/biocontainers/massiveqc:<tag>

(see massiveqc/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/massiveqc/README.html)