recipe matam

MATAM is a software dedicated to the fast and accurate targeted assembly of short reads.

Homepage:

https://github.com/bonsai-team/matam

License:

AGPL-3.0

Recipe:

/matam/meta.yaml

Links:

doi: 10.1093/bioinformatics/btx644

package matam

Versions:

1.6.1-1,  1.6.1-0,  1.6.0-3,  1.6.0-2,  1.6.0-1,  1.6.0-0

Depends:

• bzip2

• coreutils

• krona

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• numpy

• python >=3

• rdptools

• samtools

• sga

• sortmerna 2.1b.*

• vsearch

• wget

• zlib

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install matam

and update with:

conda update matam

or use the docker container:

docker pull quay.io/biocontainers/matam:<tag>

(see matam/tags for valid values for <tag>)

Download stats

Link to this page

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