- recipe medaka
Neural network sequence error correction.
- Homepage:
- Documentation:
- License:
OTHER / Mozilla Public License 2.0
- Recipe:
- Links:
usegalaxy-eu: medaka_consensus
- package medaka¶
-
- Versions:
1.7.2-1
,1.7.2-0
,1.7.1-1
,1.7.1-0
,1.7.0-0
,1.6.1-2
,1.6.1-1
,1.6.1-0
,1.6.0-0
,1.7.2-1
,1.7.2-0
,1.7.1-1
,1.7.1-0
,1.7.0-0
,1.6.1-2
,1.6.1-1
,1.6.1-0
,1.6.0-0
,1.5.0-2
,1.5.0-1
,1.5.0-0
,1.4.4-0
,1.4.3-0
,1.4.2-0
,1.4.1-0
,1.3.3-0
,1.3.2-0
,1.3.0-0
,1.2.6-1
,1.2.6-0
,1.2.5-0
,1.2.3-0
,1.2.2-0
,1.2.1-1
,1.2.1-0
,1.2.0-0
,1.1.3-0
,1.1.2-0
,1.1.1-0
,1.0.3-1
,1.0.3-0
,1.0.1-0
,1.0.0-0
,0.12.1-0
,0.11.5-1
,0.11.5-0
,0.11.4-0
,0.11.3-0
,0.11.2-0
,0.11.1-0
,0.11.0-1
,0.11.0-0
,0.10.1-0
,0.10.0-1
,0.10.0-0
,0.9.2-0
,0.9.1-0
,0.9.0-0
,0.8.1-1
,0.8.1-0
,0.8.0-0
,0.7.1-1
,0.7.0-1
,0.7.0-0
,0.6.5-0
,0.6.4-0
,0.6.2-0
,0.6.0-0
,0.5.2-0
- Depends:
bcftools
>=1.9
bzip2
>=1.0.8,<2.0a0
htslib
>=1.16,<1.17.0a0
intervaltree
>=3.0.0
libgcc-ng
>=12
libzlib
>=1.2.12,<1.3.0a0
minimap2
>=2.17
numpy
<1.20.0
pysam
>=0.16.0.1
python
>=3.8,<3.9.0a0
python_abi
3.8.* *_cp38
samtools
>=1.9
tensorflow
2.7.*
xz
>=5.2.6,<5.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install medaka
and update with:
conda update medaka
or use the docker container:
docker pull quay.io/biocontainers/medaka:<tag>
(see medaka/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/medaka/README.html)