- recipe megadepth
Megadepth is an efficient tool for extracting coverage related information from RNA and DNA-seq BAM and BigWig files. It supports reading whole-genome coverage from BAM files and writing either indexed TSV or BigWig files, as well as efficient region coverage summary over intervals from both types of files.
- Homepage:
- License:
MIT / MIT
- Recipe:
- package megadepth¶
-
- Versions:
1.2.0-1
,1.2.0-0
,1.1.3-1
,1.1.3-0
,1.1.2-0
,1.1.1-0
,1.1.0-1
,1.1.0-0
,1.0.9b-0
- Depends:
htslib
>=1.14,<1.15.0a0
libgcc-ng
>=10.3.0
libstdcxx-ng
>=10.3.0
libzlib
>=1.2.11,<1.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install megadepth
and update with:
conda update megadepth
or use the docker container:
docker pull quay.io/biocontainers/megadepth:<tag>
(see megadepth/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/megadepth/README.html)