recipe megadepth

Megadepth is an efficient tool for extracting coverage related information from RNA and DNA-seq BAM and BigWig files. It supports reading whole-genome coverage from BAM files and writing either indexed TSV or BigWig files, as well as efficient region coverage summary over intervals from both types of files.

Homepage:

https://github.com/ChristopherWilks/megadepth

License:

MIT / MIT

Recipe:

/megadepth/meta.yaml

package megadepth

Versions:

1.2.0-1,  1.2.0-0,  1.1.3-1,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1.0-1,  1.1.0-0,  1.0.9b-0

Depends:

• htslib >=1.14,<1.15.0a0

• libbigwig

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install megadepth

and update with:

conda update megadepth

or use the docker container:

docker pull quay.io/biocontainers/megadepth:<tag>

(see megadepth/tags for valid values for <tag>)

Download stats

Link to this page

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