recipe megadepth

Megadepth is an efficient tool for extracting coverage related information from RNA and DNA-seq BAM and BigWig files. It supports reading whole-genome coverage from BAM files and writing either indexed TSV or BigWig files, as well as efficient region coverage summary over intervals from both types of files.

Homepage

https://github.com/ChristopherWilks/megadepth

License

MIT / MIT

Recipe

/megadepth/meta.yaml

package megadepth

Versions

1.1.1-0,  1.1.0-1,  1.1.0-0,  1.0.9b-0

Depends

• htslib >=1.12,<1.13.0a0

• libbigwig

• libgcc-ng >=9.4.0

• libstdcxx-ng >=9.4.0

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install megadepth

and update with:

conda update megadepth

or use the docker container:

docker pull quay.io/biocontainers/megadepth:<tag>

(see megadepth/tags for valid values for <tag>)

Download stats

Link to this page

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