recipe megagta

HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs



GNU General Public License v3 (GPLv3



package megagta

(downloads) docker_megagta



depends hmmer:


depends libgcc:

depends python:


depends zlib:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install megagta

and update with::

   mamba update megagta

To create a new environment, run:

mamba create --name myenvname megagta

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `megagta/tags`_ for valid values for ``<tag>``)

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