-
recipe
megalodon
Nanopore modified base and sequence variant detection.
- Homepage
- Documentation
- License
OTHER / Mozilla Public License 2.0
- Recipe
-
package
megalodon
¶ -
- Versions
2.2.9-0
,2.2.8-0
,2.2.7-0
,2.2.6-0
,2.2.5-0
,2.2.4-0
,2.2.3-0
,2.2.2-0
,2.2.1-0
,2.2.9-0
,2.2.8-0
,2.2.7-0
,2.2.6-0
,2.2.5-0
,2.2.4-0
,2.2.3-0
,2.2.2-0
,2.2.1-0
,2.2.0-0
,2.1.1-1
,2.1.1-0
,2.1.0-0
,2.0.0-0
,1.0.2-0
- Depends
h5py
>=2.2.1
libgcc-ng
>=7.5.0
mappy
>=2.16
numpy
>=1.9.0
ont-fast5-api
>=1.1
pysam
>=0.15
python
>=3.6,<3.7.0a0
python_abi
3.6.* *_cp36m
scipy
>=1.1.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install megalodon
and update with:
conda update megalodon
or use the docker container:
docker pull quay.io/biocontainers/megalodon:<tag>
(see megalodon/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/megalodon/README.html)