recipe megalodon

Nanopore modified base and sequence variant detection.

Homepage

https://github.com/nanoporetech/megalodon

Documentation

https://nanoporetech.github.io/megalodon/index.html

License

OTHER / Mozilla Public License 2.0

Recipe

/megalodon/meta.yaml

package megalodon

Versions

2.2.9-0,  2.2.8-0,  2.2.7-0,  2.2.6-0,  2.2.5-0,  2.2.4-0,  2.2.3-0,  2.2.2-0,  2.2.1-0, 

2.2.9-0,  2.2.8-0,  2.2.7-0,  2.2.6-0,  2.2.5-0,  2.2.4-0,  2.2.3-0,  2.2.2-0,  2.2.1-0,  2.2.0-0,  2.1.1-1,  2.1.1-0,  2.1.0-0,  2.0.0-0,  1.0.2-0

Depends

• h5py >=2.2.1

• libgcc-ng >=7.5.0

• mappy >=2.16

• numpy >=1.9.0

• ont-fast5-api >=1.1

• pysam >=0.15

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• scikit-learn

• scipy >=1.1.0

• seaborn

• setuptools

• tqdm

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install megalodon

and update with:

conda update megalodon

or use the docker container:

docker pull quay.io/biocontainers/megalodon:<tag>

(see megalodon/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/megalodon/README.html)