MERFISHtools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, differential expression analysis can be performed for two or multiple conditions, including credible intervals for fold change and coefficient of variation, and controlling the expected false discovery rate.
|Versions||0.9.1, 1.0.0, 1.1.0, 1.2.0|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install merfishtools
and update with:
conda update merfishtools
A Docker container is available at https://quay.io/repository/biocontainers/merfishtools.