recipe meta-sparse

SPARSE indexes reference genomes in public databases into hierarchical clusters and uses it to predict origins of metagenomic reads.

Homepage:

https://github.com/zheminzhou/SPARSE/

License:

GPL3 / GNU General Public License v3 (GPLv3)

Recipe:

/meta-sparse/meta.yaml

package meta-sparse

Versions:

0.1.12-4,  0.1.12-3,  0.1.12-2,  0.1.12-1,  0.1.12-0,  0.1.11-0,  0.1.2-2,  0.1.2-1,  0.1.2-0

Depends:

• bowtie2

• libgcc-ng >=10.3.0

• mash

• msgpack-python

• numpy

• pandas

• pycapnp

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• samtools

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install meta-sparse

and update with:

conda update meta-sparse

or use the docker container:

docker pull quay.io/biocontainers/meta-sparse:<tag>

(see meta-sparse/tags for valid values for <tag>)

Download stats

Link to this page

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