recipe metaclock

A python package for facilitating strain-level phylogenetic and molecular clock analysis

Homepage:

https://github.com/SegataLab/metaclock

License:

A-GPL 3.0

Recipe:

/metaclock/meta.yaml

package metaclock

Versions:

1.0.0-0

Depends:

• biopython

• blast >=2.6.0

• bowtie2

• bzip2

• cmseq

• dendropy

• ete3

• mapdamage2

• matplotlib-base

• numpy

• perl-bioperl

• prokka

• pysam

• python >=3.6

• raxml

• samtools

• scikit-learn

• seaborn

• trimal

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install metaclock

and update with:

conda update metaclock

or use the docker container:

docker pull quay.io/biocontainers/metaclock:<tag>

(see metaclock/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metaclock/README.html)