recipe metacoag

MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

Homepage:

https://github.com/metagentools/MetaCoAG

Documentation:

https://metacoag.readthedocs.io/

License:

GPL / GPL-3.0

Recipe:

/metacoag/meta.yaml

Links:

doi: 10.1007/978-3-031-04749-7_5

MetaCoAG is a metagenomic contig binning tool that makes use of the connectivity information found in assembly graphs.

package metacoag

Versions:

1.1.2-0,  1.1.1-0,  1.1-0

Depends:

• biopython

• cairocffi

• click

• fraggenescan

• hmmer

• networkx

• numpy

• pandas

• python

• python-igraph

• scipy

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install metacoag

and update with:

conda update metacoag

or use the docker container:

docker pull quay.io/biocontainers/metacoag:<tag>

(see metacoag/tags for valid values for <tag>)

Download stats

Link to this page

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