-
recipe
metagenome-atlas
ATLAS - Three commands to start analysing your metagenome data
- Homepage
- Documentation
- Developer docs
- License
BSD / BSD-3-Clause
- Recipe
Atlas is a easy to use metagenomic pipeline # Quick Start
Three commands to start analysing your metagenome data: ```
conda install -c bioconda -c conda-forge metagenome-atlas atlas init --db-dir databases path/to/fastq/files atlas run
``` All databases and dependencies are installed on the fly in the directory `db-dir`. You want to run these three commands on the example_data on the GitHub repo. If you have more time, then we recommend you configure atlas according to your needs.
- check the `samples.tsv` - edit the `config.yaml` - run atlas on any cluster system
For more details see documentation.
-
package
metagenome-atlas
¶ -
- Versions
2.4.5-0
,2.4.4-0
,2.4.3-0
,2.4.2-0
,2.4.1-0
,2.4-0
,2.3.5-0
,2.3.4-0
,2.3.3-0
,2.4.5-0
,2.4.4-0
,2.4.3-0
,2.4.2-0
,2.4.1-0
,2.4-0
,2.3.5-0
,2.3.4-0
,2.3.3-0
,2.3.2-0
,2.3.beta2-0
,2.2.0-0
,2.1.4-1
,2.1.4-0
,2.1.3-0
,2.1.1-0
,2.0.6-1
,2.0.5-1
,2.0.4-1
,2.0.3-1
,2.0.1-1
,2.0.1-0
- Depends
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install metagenome-atlas
and update with:
conda update metagenome-atlas
or use the docker container:
docker pull quay.io/biocontainers/metagenome-atlas:<tag>
(see metagenome-atlas/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/metagenome-atlas/README.html)