- recipe metagraph
Ultra Scalable Framework for DNA Search, Alignment, Assembly
- Homepage:
- Documentation:
- License:
MIT / MIT
- Recipe:
The MetaGraph framework allows for indexing and analysis of very large biological sequence collections, producing compressed indexes that can represent several petabases of input data. The indexes can be efficiently queried with any query sequence of interest.
- package metagraph¶
- versions:
0.3.6-3,0.3.6-2,0.3.6-1,0.3.6-0,0.3.5-0,0.3.4-1,0.3.4-0,0.3.3-1,0.3.3-0,0.3.6-3,0.3.6-2,0.3.6-1,0.3.6-0,0.3.5-0,0.3.4-1,0.3.4-0,0.3.3-1,0.3.3-0,0.3.2-0,0.2.0-0,0.1.0-2,0.1.0-1,0.1.0-0- depends _openmp_mutex:
>=4.5- depends bzip2:
>=1.0.8,<2.0a0- depends htslib:
>=1.17,<1.21.0a0- depends jemalloc:
- depends libgcc-ng:
>=12- depends libgomp:
- depends libjemalloc:
>=5.3.0- depends libstdcxx-ng:
>=12- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install metagraph and update with:: mamba update metagraph
To create a new environment, run:
mamba create --name myenvname metagraph
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/metagraph:<tag> (see `metagraph/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/metagraph/README.html)
