recipe metapointfinder

MetaPointFinder is a tool for detecting and scoring resistance- associated point mutations directly from long-read and short-read metagenomics sequencing data, using the AMRFinder database as reference.

Homepage:

https://github.com/aldertzomer/metapointfinder

License:

Apache / Apache-2.0

Recipe:

/metapointfinder/meta.yaml

package metapointfinder

(downloads) docker_metapointfinder

versions:

1.01-0

depends bioconductor-biostrings:

2.74.0.*

depends bioconductor-pwalign:

1.2.0.*

depends diamond:

2.1.14.*

depends kma:

1.4.15.*

depends python:

>=3.14,<3.15.0a0

depends r-base:

>=4.4,<4.5.0a0

depends wget:

1.21.4.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metapointfinder

and update with::

   mamba update metapointfinder

To create a new environment, run:

mamba create --name myenvname metapointfinder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metapointfinder:<tag>

(see `metapointfinder/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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