recipe metapub

Pubmed / NCBI / eutils interaction library, handling the metadata of pubmed papers.

Homepage:

https://metapub.org

License:

Apache-2.0

Recipe:

/metapub/meta.yaml

package metapub

versions:

0.6.4-1,  0.6.4-0

depends coloredlogs:

depends cssselect:

depends docopt:

depends eutils:

depends habanero:

depends lxml:

depends lxml-html-clean:

depends python:

>=3.8

depends python-levenshtein:

depends pyyaml:

depends requests:

depends setuptools:

depends six:

depends tabulate:

depends unidecode:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metapub

and update with::

   mamba update metapub

To create a new environment, run:

mamba create --name myenvname metapub

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metapub:<tag>

(see `metapub/tags`_ for valid values for ``<tag>``)

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