- recipe metasbt
Microbial genomes characterization with Sequence Bloom Trees.
- Homepage:
- License:
MIT / MIT
- Recipe:
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
- package metasbt¶
- versions:
0.1.4.post1-0- depends biopython:
>=1.85- depends busco:
>=5.8.3- depends checkm-genome:
>=1.2.4- depends checkv:
>=1.0.3- depends fastcluster:
<1.3.0- depends howdesbt:
>=2.00.15- depends kitsune:
>=1.3.5- depends kraken2:
>=2.1.3- depends ncbitax2lin:
>=2.4.1- depends ntcard:
>=1.2.2- depends numpy:
1.26.4.*- depends packaging:
>=25.0- depends python:
>=3.9- depends requests:
>=2.32.4- depends scipy:
>=1.13.1- depends tabulate:
>=0.9.0- depends tqdm:
>=4.67.1- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install metasbt and update with:: mamba update metasbt
To create a new environment, run:
mamba create --name myenvname metasbt
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/metasbt:<tag> (see `metasbt/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/metasbt/README.html)
