Package Recipe 'metaseq'

recipe metaseq¶

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data.

Homepage: http://github.com/daler/metaseq
License: MIT / MIT
Recipe: /metaseq/meta.yaml

package metaseq¶

Versions

0.5.6-2, 0.5.6-0

Depends

biopython
bx-python >=0.7.1
cython
fisher
gffutils >=0.8.2
matplotlib >=1.3.1
numpy >=1.8.0
pandas >=0.13.1
pybedtools >=0.6.6
pysam >=0.7
python >=2.7,<2.8.0a0
pyyaml >=3.10
scikit-learn
scipy >=0.10.1

Required By

metaseq-all

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install metaseq

and update with:

conda update metaseq

or use the docker container:

docker pull quay.io/biocontainers/metaseq:<tag>

(see metaseq/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metaseq/README.html)