recipe metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data.

Homepage

http://github.com/daler/metaseq

License

MIT / MIT

Recipe

/metaseq/meta.yaml

package metaseq

Versions

0.5.6-4,  0.5.6-3,  0.5.6-2,  0.5.6-0

Depends

• biopython

• bx-python >=0.7.1

• fisher

• gffutils >=0.8.2

• libgcc-ng >=9.3.0

• matplotlib >=1.3.1

• numpy >=1.8.0

• pandas >=0.13.1

• pybedtools >=0.6.6

• pysam >=0.7

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• pyyaml >=3.10

• scikit-learn

• scipy >=0.10.1

Required By

• metaseq-all

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install metaseq

and update with:

conda update metaseq

or use the docker container:

docker pull quay.io/biocontainers/metaseq:<tag>

(see metaseq/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metaseq/README.html)