recipe metasnv

SNV calling software

Homepage:

http://metasnv.embl.de

License:

GPLv3

Recipe:

/metasnv/meta.yaml

package metasnv

Versions:

2.0.4-2,  2.0.4-1,  2.0.4-0,  2.0.3-0,  2.0.2-0,  2.0.1-0,  2.0.0-1,  2.0.0-0,  1.0.3-4, 

2.0.4-2,  2.0.4-1,  2.0.4-0,  2.0.3-0,  2.0.2-0,  2.0.1-0,  2.0.0-1,  2.0.0-0,  1.0.3-4,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0,  1.0.2-0

Depends:

• bioconductor-biocparallel >=1.26

• htslib >=1.14,<1.15.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• numpy

• pandas

• pandoc >=2.1

• python >=3.7,<3.8.0a0

• python_abi 3.7.* *_cp37m

• r-ape

• r-base >=4.0

• r-batchtools

• r-cairo

• r-cluster

• r-data.table

• r-dplyr

• r-dt

• r-forcats

• r-fpc

• r-futile.logger

• r-getopt

• r-ggplot2

• r-ggrepel

• r-gridextra

• r-kableextra

• r-optparse

• r-readr

• r-reshape2

• r-rmarkdown

• r-tidyr

• samtools >=1.12

• zlib >=1.2.11,<1.3.0a0

Required By:

• motus

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install metasnv

and update with:

conda update metasnv

or use the docker container:

docker pull quay.io/biocontainers/metasnv:<tag>

(see metasnv/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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