recipe metasv

An accurate and integrative structural-variant caller for next generation sequencing

Homepage

https://github.com/bioinform/metasv

License

MIT

Recipe

/metasv/meta.yaml

package metasv

Versions

0.5.4-2,  0.5.4-1,  0.5.4-0,  0.4.0-4,  0.4.0-3

Depends

• age-metasv

• libgcc-ng >=7.5.0

• pybedtools 0.6.9

• pysam 0.7.7

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• pyvcf 0.6.7

• spades

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install metasv

and update with:

conda update metasv

or use the docker container:

docker pull quay.io/biocontainers/metasv:<tag>

(see metasv/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metasv/README.html)