- recipe metator
Metagenomic binning based on Hi-C data.
- Homepage:
- Documentation:
- License:
GPL3 / GPL-3.0-or-later
- Recipe:
- Links:
- package metator¶
- versions:
1.3.7-0- depends biopython:
- depends bowtie2:
- depends bwa:
- depends checkv:
- depends cooler:
- depends hicstuff:
- depends hmmer:
- depends libgcc:
>=13- depends libstdcxx:
>=13- depends looseversion:
- depends micomplete:
- depends networkx:
- depends numpy:
- depends openjdk:
- depends pairix:
- depends pairtools:
- depends pandas:
- depends prodigal:
- depends pyfastx:
- depends pysam:
- depends python:
>=3.10,<3.11.0a0- depends python_abi:
3.10.* *_cp310- depends samtools:
- depends scikit-learn:
- depends scipy:
- depends seaborn-base:
- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install metator and update with:: mamba update metator
To create a new environment, run:
mamba create --name myenvname metator
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/metator:<tag> (see `metator/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/metator/README.html)
