recipe metawatt

MetaWatt is a metagenomic binning tool

Homepage

https://sourceforge.net/projects/metawatt/

License

AFL

Recipe

/metawatt/meta.yaml

The Metawatt binner is a graphical binning tool that makes use of multivariate statistics of tetranucleotide frequencies and differential coverage based binning. It also performs taxonomic assessment of binning quality (via diamond BLASTx). Created bins can be edited and exported as fasta. The Metawatt is implemented in Java SWING and minimally depends on Diamond, HMMer3.1, BBMap, Prodigal and the Batik library for the export of SVG graphics.

package metawatt

(downloads) docker_metawatt

Versions

3.5.3-1, 3.5.3-0

Depends aragorn

Depends bbmap

Depends blast

Depends diamond

0.7.*

Depends fasttree

Depends hmmer

Depends mafft

Depends openjdk

Depends prodigal

Depends samtools

Depends wget

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install metawatt

and update with:

conda update metawatt

or use the docker container:

docker pull quay.io/biocontainers/metawatt:<tag>

(see metawatt/tags for valid values for <tag>)

Notes

metawatt –help