Package Recipe 'meteor'

recipe meteor

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems.

Homepage:: https://github.com/metagenopolis/meteor
License:: GPL3 / GPL-3.0-or-later
Recipe:: /meteor/meta.yaml

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes), functional analysis and strain-level population structure inference.

package meteor¶

Versions:

2.0.22-0, 2.0.21-0, 2.0.20-0, 2.0.19-0, 2.0.18-0, 2.0.17-0, 2.0.16-0, 2.0.14-2, 2.0.14-1,

2.0.22-0, 2.0.21-0, 2.0.20-0, 2.0.19-0, 2.0.18-0, 2.0.17-0, 2.0.16-0, 2.0.14-2, 2.0.14-1, 2.0.14-0, 2.0.13-0, 2.0.11-0, 2.0.9-0

Depends:

on biom-format
on bowtie2 >=2.3.5
on cogent3
on ete4
on freebayes >=1.3.6
on packaging
on pandas
on py-bgzip
on pyarrow
on pysam
on python >=3.10,<3.13

Additional platforms:

Installation¶

You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).

Pixi¶

With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:

pixi global install meteor

to add into an existing workspace instead, run:

pixi add meteor

In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:

pixi workspace channel add conda-forge
pixi workspace channel add bioconda

Conda¶

With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:

conda install meteor

Alternatively, to install into a new environment, run:

conda create -n envname meteor

with envname being the name of the desired environment.

Container¶

Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:

docker pull quay.io/biocontainers/meteor:<tag>

(see meteor/tags for valid values for <tag>).

Integrated deployment¶

Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/meteor/README.html)