Package Recipe 'mgnify-genome-search'

recipe mgnify-genome-search

MAGs queue script against MGnify database

Homepage:: https://github.com/SantaMcCloud/MGnify-genome-search
License:: GPL / GPL-3.0-only
Recipe:: /mgnify-genome-search/meta.yaml

Script for queue MAGs against MGnify database

package mgnify-genome-search¶

versions:

1.0.0-0

depends biopython:

depends jsonapi-client:

depends pandas:

depends python:

>=3.9

depends requests:

depends sourmash:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mgnify-genome-search

and update with::

   mamba update mgnify-genome-search

To create a new environment, run:

mamba create --name myenvname mgnify-genome-search

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mgnify-genome-search:<tag>

(see `mgnify-genome-search/tags`_ for valid values for ``<tag>``)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mgnify-genome-search/README.html)